Protein Info for DZA65_RS23005 in Dickeya dianthicola ME23

Annotation: site-specific tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 581 PF01807: Zn_ribbon_DnaG" amino acids 8 to 93 (86 residues), 73.5 bits, see alignment E=1e-24 PF00589: Phage_integrase" amino acids 292 to 459 (168 residues), 108.2 bits, see alignment E=4e-35

Best Hits

Predicted SEED Role

"FIG00613045: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XXX3 at UniProt or InterPro

Protein Sequence (581 amino acids)

>DZA65_RS23005 site-specific tyrosine recombinase XerC (Dickeya dianthicola ME23)
MGRMTPAELEQLKRGVSLRAVAQSQGHTLKKQGADSYVCRCPFHQENTPSCVITPSKNLY
HCFGCGASGSVLDWLQHTERLTYPQTLLRLRELAGSASFLAAVPVPASSPRQKLADLDDD
GQALLNQVIGFYHQSLLASPEAQQWLAGRGLTHPELVSHFRLGFAGHHGIGGSALLLRFV
AWRRERNWSETTLKTQTHHQYRFILWAAERGLHYGRDITLPILEHYQRHLYQYRKPNGEP
LSTRTQRSQLGPLVVWFGWMTRHHLLLADPASGLVLPRLEKRLPRHILSVADVEQVLALP
DLTTLQGIRDRALMELLWSTGIRRGEVAVLEVYSVDASRHIVTIVQGKGKKDRVIPVGQR
ALRWLAYYLQAVRPQLLVNPHCPALFVALDGIEGLTPNGITNLVSHYIKASGIAKWGSCH
LFRHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPAERDPEEE
TGLPADLMADEEADNPSPDKREKKEEAERLGQIWVGDGAKLVTNQKDCPGCLISADGLRI
YRSPSEKPNALEHLNPTGIQANFVQQKDGKITGNAHMSIEK