Protein Info for DZA65_RS22600 in Dickeya dianthicola ME23

Annotation: 4Fe-4S dicluster domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 PF12800: Fer4_4" amino acids 10 to 23 (14 residues), 13.6 bits, see alignment (E = 4.4e-05) amino acids 86 to 101 (16 residues), 23.5 bits, see alignment (E = 2.9e-08) PF13247: Fer4_11" amino acids 53 to 150 (98 residues), 31 bits, see alignment E=1.5e-10 PF25160: LdpA_Fe-S-bd" amino acids 62 to 107 (46 residues), 31.7 bits, see alignment E=6.3e-11 PF12837: Fer4_6" amino acids 81 to 103 (23 residues), 28.7 bits, see alignment (E = 5.5e-10) PF00037: Fer4" amino acids 82 to 104 (23 residues), 33.1 bits, see alignment (E = 2.1e-11) PF12838: Fer4_7" amino acids 87 to 147 (61 residues), 33.8 bits, see alignment E=2.3e-11 PF13187: Fer4_9" amino acids 87 to 147 (61 residues), 27.7 bits, see alignment E=1.3e-09 PF12798: Fer4_3" amino acids 88 to 102 (15 residues), 16.5 bits, see alignment (E = 7.5e-06)

Best Hits

Swiss-Prot: 47% identical to YGFS_ECOLI: Putative electron transport protein YgfS (ygfS) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 97% identity to ddd:Dda3937_01086)

Predicted SEED Role

"Electron transport protein HydN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y3V1 at UniProt or InterPro

Protein Sequence (177 amino acids)

>DZA65_RS22600 4Fe-4S dicluster domain-containing protein (Dickeya dianthicola ME23)
MNQFVIADAAKCIGCRTCEIACAVAHAGGNQQKLHKSHFFPRLKVIKNANVSTPVLCHQC
ENAPCASVCPHDALVQHKDSIQVISSRCIGCKSCVIACPFGAIDVVTRASDDKAPAPSLS
GSEVHKCDLCIGVADSPSCVRVCPTSALTLVTPQALTERVLEKQQRSAWHHADIRLR