Protein Info for DZA65_RS21775 in Dickeya dianthicola ME23

Annotation: DUF1145 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 95 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 31 to 52 (22 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details PF06611: DUF1145" amino acids 4 to 60 (57 residues), 86.6 bits, see alignment E=4.3e-29

Best Hits

Swiss-Prot: 65% identical to YHHL_ECOLI: Uncharacterized protein YhhL (yhhL) from Escherichia coli (strain K12)

KEGG orthology group: K08993, putative membrane protein (inferred from 96% identity to dze:Dd1591_4067)

Predicted SEED Role

"Putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D1E8 at UniProt or InterPro

Protein Sequence (95 amino acids)

>DZA65_RS21775 DUF1145 family protein (Dickeya dianthicola ME23)
MSIWINLGRLLMLGIWGFLVLNLIHPFPRPLNIFMILAMGFMLLMHGVQFLLLKASQPKD
APPLSGLLQLRIFLFGVFELLDWQRKQPTPPRKRR