Protein Info for DZA65_RS21765 in Dickeya dianthicola ME23

Annotation: signal recognition particle-docking protein FtsY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 PF02881: SRP54_N" amino acids 171 to 236 (66 residues), 59.5 bits, see alignment E=4.7e-20 TIGR00064: signal recognition particle-docking protein FtsY" amino acids 183 to 454 (272 residues), 376.4 bits, see alignment E=3.9e-117 PF06414: Zeta_toxin" amino acids 250 to 360 (111 residues), 33.4 bits, see alignment E=4.9e-12 PF00448: SRP54" amino acids 254 to 454 (201 residues), 261.4 bits, see alignment E=7.4e-82

Best Hits

KEGG orthology group: K03110, fused signal recognition particle receptor (inferred from 86% identity to ddd:Dda3937_02012)

Predicted SEED Role

"Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)" in subsystem Bacterial Cell Division or Two cell division clusters relating to chromosome partitioning or Universal GTPases (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CFB0 at UniProt or InterPro

Protein Sequence (458 amino acids)

>DZA65_RS21765 signal recognition particle-docking protein FtsY (Dickeya dianthicola ME23)
MAKEKKRGFFSWLGLGRQDEDKTEQPQPAPEASQADEATPAAPEPAQNMSDEALEQPALS
DSLDETSLNEIAVDETTVDETALDETEESQPIEAAAEISPTPVEPLETLAQAIAAVPEIA
EPQADTEAEDDVAPEPETVIAPMASQEQERPTKEGFFARLKRSLVKTRQNLGSGFVGLFR
GKKIDDDLFDELEEQLLIADVGVETTRKIIDRLTEHASRKQLKDAEALIALLKTEMSDIL
AKVDAPLAIDSKTPFVILMVGVNGVGKTTTIGKLARQYQAQGKSVMLAAGDTFRAAAVEQ
LQVWGQRNNVPVVAQHTGADSASVIFDALQAAKARGVDVLIADTAGRLQNKAHLMEELKK
IVRVMKKLDEDAPHEVMLTLDASTGQNAVSQTKLFNEAVGLNGITLTKLDGTAKGGVIFA
IADQFGIPIRYIGVGESIDDLRPFKADDFIEALFARED