Protein Info for DZA65_RS21090 in Dickeya dianthicola ME23

Annotation: tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 TIGR02224: tyrosine recombinase XerC" amino acids 12 to 299 (288 residues), 350.5 bits, see alignment E=3.9e-109 PF02899: Phage_int_SAM_1" amino acids 12 to 93 (82 residues), 73.2 bits, see alignment E=1.7e-24 PF00589: Phage_integrase" amino acids 116 to 285 (170 residues), 183.6 bits, see alignment E=2.7e-58

Best Hits

Swiss-Prot: 76% identical to XERC_SERMA: Tyrosine recombinase XerC (xerC) from Serratia marcescens

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 97% identity to ddd:Dda3937_00299)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CCQ7 at UniProt or InterPro

Protein Sequence (302 amino acids)

>DZA65_RS21090 tyrosine recombinase XerC (Dickeya dianthicola ME23)
MNPDSPLSAPAEAFLRYLRVERQLSPLTQSSYAHQLQVIIDMLSASGIADWQALDAAGVR
AVVARSKRAGLNAASLAQRLSALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVD
EVSRLLDIDLSDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVDLDSGEVWVMGKGSKER
KLPIGATAVTWLRHWLAIRDIYAPEGDAVFISSLGKRISMRNVQKRFAEWGVKQGVNSHV
NPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRARRG
KS