Protein Info for DZA65_RS20755 in Dickeya dianthicola ME23

Annotation: SPOR domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 42 to 61 (20 residues), see Phobius details PF05036: SPOR" amino acids 266 to 339 (74 residues), 42.6 bits, see alignment E=3.2e-15

Best Hits

KEGG orthology group: K03112, DamX protein (inferred from 93% identity to ddd:Dda3937_04184)

Predicted SEED Role

"DamX, an inner membrane protein involved in bile resistance"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C316 at UniProt or InterPro

Protein Sequence (350 amino acids)

>DZA65_RS20755 SPOR domain-containing protein (Dickeya dianthicola ME23)
MDEFNPEEELKPDTSDRRPVRQQRRSKGFSAPSVSLSRQHTMIGIGIVVLVLLIIGIGSA
LQSPGQNTSSAPSQPAGSGRNIDLSSSMSSSQEPGTPPPAASQPSSPAPVAAQSAATGSV
QALSGQPVSGTPTQAPLPAQNDNQQRIELPGNITDALSQPQQQDRVNALSSGLPTEPATV
LTPATKGGRAQPAEKAPPHVQAEKQSSPASRKAVAEGKETAKPTANTHRAPTTAVTPAPA
SKPATAVKPAASAASQSGTAIQSAPAGHFTVQLSSASREESLKVYAREQRLANYWVYETK
RDGRPWYVLVNGVYASPEDAKRAIASLPADVQAKKPWVRPIRQVKQDLTK