Protein Info for DZA65_RS20455 in Dickeya dianthicola ME23

Annotation: 50S ribosomal protein L14

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 123 TIGR01067: ribosomal protein uL14" amino acids 1 to 123 (123 residues), 198.1 bits, see alignment E=1.8e-63 PF00238: Ribosomal_L14" amino acids 1 to 123 (123 residues), 183.4 bits, see alignment E=6.9e-59

Best Hits

Swiss-Prot: 99% identical to RL14_KLEP7: 50S ribosomal protein L14 (rplN) from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)

KEGG orthology group: None (inferred from 98% identity to eae:EAE_04905)

MetaCyc: 98% identical to 50S ribosomal subunit protein L14 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L14p (L23e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CD46 at UniProt or InterPro

Protein Sequence (123 amino acids)

>DZA65_RS20455 50S ribosomal protein L14 (Dickeya dianthicola ME23)
MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA
VVVRTKKGVRRPDGSVVRFDGNACVILNNNSEQPIGTRIFGPVTRELRTEKFMKIISLAP
EVL