Protein Info for DZA65_RS20050 in Dickeya dianthicola ME23

Annotation: DUF4347 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1930 PF14252: DUF4347" amino acids 135 to 290 (156 residues), 174.4 bits, see alignment E=5e-55 PF17803: Cadherin_4" amino acids 1006 to 1070 (65 residues), 29.4 bits, see alignment (E = 2.9e-10) amino acids 1128 to 1194 (67 residues), 31.1 bits, see alignment (E = 8.3e-11) PF05345: He_PIG" amino acids 1413 to 1508 (96 residues), 70.9 bits, see alignment 3e-23 amino acids 1513 to 1608 (96 residues), 75.2 bits, see alignment 1.3e-24 amino acids 1621 to 1710 (90 residues), 69.2 bits, see alignment 1e-22

Best Hits

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y242 at UniProt or InterPro

Protein Sequence (1930 amino acids)

>DZA65_RS20050 DUF4347 domain-containing protein (Dickeya dianthicola ME23)
MLWRHLFGNRYLFSQKHRNPARSVELTADMPLGYALEARVLFDGAIAATVDQTSTAQNAT
QAATTDTAVHAADSHAQRSVSQTDSSSQDSGTKDTATKDTATKDTATKDTAAKDTATDSA
TVAVAGDAVQTHKEVVFIDTSVADYQTLVKQVPSGIDVVLLDNSKDGLTQMAAWAQTHSS
YDVIHIISHGSEGRLYLGDLTLDSANVASRQSDLSALGAALTQHGDILLYGCSVASGEGE
SFANAIASATGADVAASSDLTGSAAKGGDWTLEKSVGTDGIQADALAFSHYNELLTVVTF
DNTDLNSGSGVYNKTVSSVGFTFTGPDGYSFSNNYGTNYNVFPDSAGNGSGDATKVTIEV
ASGYTFDLTSFGYYTSIADTITVTFTYADNTTVTGTLTATTNTNIALSNFSVFHDASSNA
LPTSANDVIKVVISSANGTGGFDFGTNNFDISDVKAIVVSNATSTVTAGPSGEASTFSTT
ATSAASAVSLMDFTIADPGTSDGLATNVSAFYATVSGTATSAELSQMQFLLSGPDATNVV
GTYSSGTGRVTFSGLNLSIADGGSETYTIKAYYNDNTSSNDITDHHTVVLSVNASNFTSV
SGSSTFAGSQANVTNGSGASVDIAATKLIYSQSPSTAVVSGVNFTTQPVVIAVDDRGNID
TDFSGSITLSENGSGSLTGATAVTASNGTATFSGVMYTSASDADANFVLTAASGSLVSAT
SASINPDVVATKLVFSTQPVPTTIQNGQSAGFTTVPVVQAVDANGLVDQDYVTNIMLTVT
DPNDGTVDGTVNSLTVTAGDQDASGTTVTLTPSGGIATYSGLVIMYTNSGSTNTLALRAT
SGSLTAVNSSSITSTSNTAPVFSNLNGGATYTENGSAVVMDSDVTVADTELDGLNSGLGN
YNGASITIARNGGASSNDSFGNSGLLGALTQGQNFTYNGTTVGSVTTHSGGTLTLTFNSN
ATSAMVDAVLQSLTYANSSDDPPASVTLSWTFNDGSLNTTGSNQAVLSITPVNDAPVISN
TAVSKTFNEDTAQTFSASDFGFSDVDSGDTLQSITVVAAPAAGELFIDANSDGVRGVGDT
LLGNGAVVSAANIGKLTFRPAANANGAGYAAFTWTVYDGNASSANVGTMTLNVTAVNDAP
VISNTAVSKTFNEDSAQTFSASDFGFSDVDSGDTLQSITVVAAPAAGELFIDANSDGVRG
VGDTLLGNGAVVSAADIGKLTFRPAANANGAGYAAFTWTVYDGNASSDNVGTMTLNVTAV
NDAPTLSNGTTVTLTSTSEDVTSSATTVSSLLSNAGYGDVDSGAASGIAITTTAGNGGWQ
YSTDSGANWFNVGSVSGSSALLLSSTAQVRYVPDSANGETATFGFRAWDQTSGSATAGAS
KGLADTSTSGGGSAFSTNSAQASLAVTSVNDAPTIGNAVSGQNATKDTVFSFAVPAGTFV
DIDSEDTLTLSATLADGSALPGWLSFNPATRTFSGTPGNGDVGNLTIRVTATDGSSASVS
TTFGLTVNNSNLPPVVSNTVVDQTSAQNGSFSFTVPSGTFTDPDSGDTLTLSATLADGSA
LPGWLSFNPATRTFSGTPGNGDVGNLTIRVTATDSGNASVSTTFGLAVANVNDAPEVSGS
LNAQTAAQSGSFSFTVPSGTFTDPDSGDTLTLSATLADGSALPGWLSFNPATRTFSGTPG
NGDVGNLTIRVTATDSGNDSVSTTFGLAVTGSSVGTDSRVDTDSRVDNGDPEFRINSGAA
VPPSAPVLPAITVAPNAPVTLGALFSPASLGALNAGGAADNATATATIFQASQHMPQASS
APVSQIASAFAQGAASGSARLFESSLGSFPSFNTGGALGGSSSLAGLFSGINLPSLSPMA
VFSGGSWRDINTSGANTGRLTTPLGGVAMQFAPGLERQLQHIGDDAQQRLAAMEQALLDI
GQRAGDRQHG