Protein Info for DZA65_RS18965 in Dickeya dianthicola ME23

Annotation: YacL family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 PF06062: UPF0231" amino acids 1 to 117 (117 residues), 151 bits, see alignment E=9.7e-49

Best Hits

Swiss-Prot: 81% identical to Y3552_PECCP: UPF0231 protein PC1_3552 (PC1_3552) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K09910, hypothetical protein (inferred from 97% identity to dze:Dd1591_0640)

Predicted SEED Role

"FIG00613276: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CEL2 at UniProt or InterPro

Protein Sequence (120 amino acids)

>DZA65_RS18965 YacL family protein (Dickeya dianthicola ME23)
MDYEFLRDVTGQVVVRMSMGHEAVGHWLNEEVKGQQAVLDEVEAAVRELAGSERQWERAG
HEYTLLLDSEEVMVRANQLAFETDELEEGMSYYDEESLSLCGLEDFLELLEKYRSFVDKG