Protein Info for DZA65_RS18860 in Dickeya dianthicola ME23

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 transmembrane" amino acids 39 to 66 (28 residues), see Phobius details amino acids 112 to 133 (22 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details amino acids 195 to 217 (23 residues), see Phobius details amino acids 241 to 263 (23 residues), see Phobius details amino acids 300 to 325 (26 residues), see Phobius details PF00528: BPD_transp_1" amino acids 125 to 329 (205 residues), 55.8 bits, see alignment E=2.6e-19

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 98% identity to ddc:Dd586_3476)

Predicted SEED Role

"sugar ABC transport system, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D2I1 at UniProt or InterPro

Protein Sequence (333 amino acids)

>DZA65_RS18860 sugar ABC transporter permease (Dickeya dianthicola ME23)
MNRKSLIQPGASLVDTLVTPVEKSINLLQKFGGRQVMPWFFIAPNMLLFAVFVFIPILLA
VCYAFTGGTNILLWDRPYVGLQNFATLLSCEQYTVPATCEQDLFWTGVYNTVSFTFFNVT
CTLGVALVTALILNRKIIARGFFRAIFFYPVLLSPVVVGLVWQWFLNRNGLLNLVLSSLG
GQPVTFLLEPSLARFWVVFVSVWFHVGFYTLILLAGLQAIPRDIYEAAAVDGTSRWRGFY
RLTLPLLAPNILVVVILLTINSVQIFDEAWVLTNGGGPGTANNFIVQYIYQTAFSSNASL
YGLASAASVLMGLVLMILTALQFLLTRRLEGKK