Protein Info for DZA65_RS17005 in Dickeya dianthicola ME23

Annotation: TSUP family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 34 to 61 (28 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 98 to 115 (18 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details amino acids 171 to 187 (17 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details amino acids 222 to 243 (22 residues), see Phobius details PF01925: TauE" amino acids 8 to 236 (229 residues), 44.3 bits, see alignment E=8.9e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C8J5 at UniProt or InterPro

Protein Sequence (244 amino acids)

>DZA65_RS17005 TSUP family transporter (Dickeya dianthicola ME23)
MDHQDLYFFIIAIFAVIQSIFGMGILVFGTPTLLLFGFDFSTVLALLLPSSVLISLTQVL
TSGHVPFIKREKKNLLLCAIFVLVSLSLILALGLKINIDILVGIVLLFSAAVRLSDRFRN
YIKHRLSRYERSFVIFMGVIHGMTNMGGALLALYASATQDEKQGIRATVSRYYLVFGLIQ
LTTLSLLKWDALNFYGFMAAPLALIVYLVVGNIIFRKTSSQAYERLVTFFITVYGVVVLT
KGYL