Protein Info for DZA65_RS16655 in Dickeya dianthicola ME23

Annotation: cytoskeleton protein RodZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 transmembrane" amino acids 115 to 136 (22 residues), see Phobius details PF13560: HTH_31" amino acids 18 to 80 (63 residues), 33.3 bits, see alignment E=1e-11 PF13413: HTH_25" amino acids 20 to 81 (62 residues), 53.2 bits, see alignment E=4.1e-18 PF01381: HTH_3" amino acids 21 to 50 (30 residues), 26.6 bits, see alignment (E = 1e-09) PF13464: RodZ_C" amino acids 255 to 327 (73 residues), 87.4 bits, see alignment E=1.1e-28

Best Hits

Swiss-Prot: 62% identical to RODZ_PECAS: Cytoskeleton protein RodZ (rodZ) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: None (inferred from 92% identity to ddd:Dda3937_03704)

Predicted SEED Role

"FIG021952: putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CMA1 at UniProt or InterPro

Protein Sequence (331 amino acids)

>DZA65_RS16655 cytoskeleton protein RodZ (Dickeya dianthicola ME23)
MNTEATQDNTAATIMTPGERLREARERLGLTQQVVAERLCLKVSTVREIEDNNTPAGLAP
TFLRGYIRSYARLVHLPEDELLPMLEKQVVPSRVSNVAPMQSLALGKSRKKRDGWLMLFT
WLILLGVLSLTVAWWWQNHQAQQQEINSMVDHANASQNRKDGQAADVNSDPEPVDSDENV
VGAPSGNGQPIVLNPPAAASSQPAVSSPVAPATSAPAAASAAAQFSEQPLLNQSATAPAS
AAPAADASGAPGAIVMRFTADCWLEVVDAAGKKLFSGVQRNGSVLNLTGQAPYRLKIGAP
GAVQVDFQGKPVDLSRFVKSHQVARLTLTAE