Protein Info for DZA65_RS16430 in Dickeya dianthicola ME23

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 146 PF21190: Bbp16" amino acids 9 to 127 (119 residues), 147.3 bits, see alignment E=1.2e-47

Best Hits

KEGG orthology group: None (inferred from 87% identity to ecg:E2348C_2750)

Predicted SEED Role

"FIG00641850: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y0I1 at UniProt or InterPro

Protein Sequence (146 amino acids)

>DZA65_RS16430 hypothetical protein (Dickeya dianthicola ME23)
MILDKLLMFSEAQAVTATAASTDVVDLAPVDGTRRDIGVGEPLEFFANVNTTATAAGAAT
VNVQLQTSPDNSTWTTLYDSGALALSALVAGKRVVSAKVPAGVLRYLRVNYSVGTGPLTA
GAFTSGISLDVDNNTPYYPVRSKITG