Protein Info for DZA65_RS15400 in Dickeya dianthicola ME23

Annotation: tripartite tricarboxylate transporter TctB family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 37 to 56 (20 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 101 to 127 (27 residues), see Phobius details PF07331: TctB" amino acids 5 to 137 (133 residues), 72.5 bits, see alignment E=2.1e-24

Best Hits

KEGG orthology group: K07794, putative tricarboxylic transport membrane protein (inferred from 96% identity to ddd:Dda3937_02112)

Predicted SEED Role

"Tricarboxylate transport protein TctB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D3Z3 at UniProt or InterPro

Protein Sequence (142 amino acids)

>DZA65_RS15400 tripartite tricarboxylate transporter TctB family protein (Dickeya dianthicola ME23)
MSDRLFAGVWLALCLIGLVIGWEIQSEYSYEPVGPRPFPVAILGLMALCAALMLLRKPDI
LVWPLPPVRRRILLLVIMLALYAWLFEPLGFPLTTALLGCGIGMLFGAVWWMAALSGAVM
GVSLFYAFDKLLDVTLPAGAWF