Protein Info for DZA65_RS15365 in Dickeya dianthicola ME23

Annotation: DedA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 transmembrane" amino acids 12 to 51 (40 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 190 to 208 (19 residues), see Phobius details PF09335: VTT_dom" amino acids 49 to 177 (129 residues), 81.9 bits, see alignment E=2.7e-27

Best Hits

Swiss-Prot: 81% identical to DEDA_ECOLI: Protein DedA (dedA) from Escherichia coli (strain K12)

KEGG orthology group: K03975, membrane-associated protein (inferred from 96% identity to ddd:Dda3937_02104)

Predicted SEED Role

"DedA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y0E8 at UniProt or InterPro

Protein Sequence (220 amino acids)

>DZA65_RS15365 DedA family protein (Dickeya dianthicola ME23)
MDFVRFIIDFILHIDVHLAGLVAQYGVWIYAILFLILFCETGLVVTPFLPGDSLLFVAGA
LAALPTNDLNVHLMVTLMVVAAVLGDAVNYTIGRLFGEKLFRNPHSRIFRRSYLERTHAF
YARHGGKTIILARFVPIVRTFAPFVAGMGHMRYREFALYNMTGALLWVLLFTYAGYLFGD
LPVVQENLKLLIVAIIFISILPGLIEFWRHKRAMTRRNMK