Protein Info for DZA65_RS15070 in Dickeya dianthicola ME23

Annotation: tail sheath protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 473 PF04984: Phage_sheath_1" amino acids 207 to 361 (155 residues), 59.1 bits, see alignment E=4.9e-20 PF17482: Phage_sheath_1C" amino acids 371 to 470 (100 residues), 70.7 bits, see alignment E=9.8e-24

Best Hits

KEGG orthology group: None (inferred from 64% identity to lhk:LHK_01152)

Predicted SEED Role

"Bacteriophage tail sheath protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CED2 at UniProt or InterPro

Protein Sequence (473 amino acids)

>DZA65_RS15070 tail sheath protein (Dickeya dianthicola ME23)
MASPNVTFYEIPGSTRKPGRYFEFNTRLAVRSLPGNQQTVLMLAQMLPTGTQPPLTAVDV
FSSDEAETYFGAGSMAHLMVVSALTCYSYLQLQVIGISDAAGAQPATGTVTVTGPAAGNG
TMSVRVGTTRVNVAVSTGDTAAAIATDMVAALNQQAALPVTAAASGGVITFTAKNKGAAG
NEIVLRATATASGVSVAATAMTGGEINPDIAPALAQVFSAGHSIIVCPYATQDALTELRS
HLDNASGPLEQRGVIGVTGWKNSLSTGITLTSSINAGRITAGWHRDSVCTVAQIAAGYAA
MVASEEDPARPLNTLAMSALDVTALASRPMRTEQEKALYNGLAPFEIGPGDTVQIVRAIS
TYTKSAAGVDDVALLDITTIRTLDYVRKACRERITLRFPRDKLSSRTPAKVRSELLDVLY
KLEELEIIENVDANKDALIVERDSQDMNRLNAAIPVDVVNGLHVFAGRIDLLL