Protein Info for DZA65_RS15045 in Dickeya dianthicola ME23

Annotation: tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 PF21683: GpP-like_1st" amino acids 9 to 93 (85 residues), 81.7 bits, see alignment E=5.9e-27 PF22255: Gp44-like_2nd" amino acids 97 to 177 (81 residues), 74.6 bits, see alignment E=1e-24 PF22630: NMB1110_3rd" amino acids 267 to 309 (43 residues), 40 bits, see alignment 8.5e-14 PF22174: NMB1110-like_C" amino acids 312 to 380 (69 residues), 117.8 bits, see alignment E=3e-38

Best Hits

KEGG orthology group: None (inferred from 68% identity to ypy:YPK_0188)

Predicted SEED Role

"FIG003269: Prophage tail protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CAN0 at UniProt or InterPro

Protein Sequence (407 amino acids)

>DZA65_RS15045 tail protein (Dickeya dianthicola ME23)
MPTQSDNNTVSIIVNGKAHSAWSRYQIDSDFLVPADAWSVSLGLPEGAFPGDIKRGAPVQ
VMIGRDVVMIGRIDRIRRAASKRGLTLSLSGRDNMSVLVDCAAPLLTSRQIGLEEVIAQV
VRPLGITKIRLNAESSIRNDKVATEPGERAWDLLHRACAGRGLWPWFSPDGTLMIGGPDY
TAPPVATLILRPDGKGNNVIQLDDESSEDRSFSELTLLAQGHAHTTKSKKLGIVDVDGTS
TATVSDSDDDDDDDNDDDELDMYTGTAETGLHGLKAKAYDPTVTHYRPQIIVCGDAESQE
QMNYRARKAMADARLAGYDLTAVVAGHRTSDGKLWEPGQRIHVISDVHGINAVFFLMGRE
FVGGRQDGMRTTLRLKEDGVWIPDAFPRKKRKRRRKHKQELGIVDVG