Protein Info for DZA65_RS14810 in Dickeya dianthicola ME23

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 149 to 172 (24 residues), see Phobius details amino acids 184 to 206 (23 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 284 to 306 (23 residues), see Phobius details amino acids 317 to 336 (20 residues), see Phobius details amino acids 342 to 364 (23 residues), see Phobius details amino acids 373 to 396 (24 residues), see Phobius details amino acids 409 to 429 (21 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 390 (362 residues), 139.5 bits, see alignment E=6.5e-45

Best Hits

Swiss-Prot: 74% identical to NICT_PSEPK: Putative metabolite transport protein NicT (nicT) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 94% identity to ddd:Dda3937_01834)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CQ92 at UniProt or InterPro

Protein Sequence (434 amino acids)

>DZA65_RS14810 MFS transporter (Dickeya dianthicola ME23)
MTAAYSQTPTPVAVALVYRNIAWRLIPFLCLCYLAAYLDRINIGLAKLQMANQLALSDIA
FGFGAGLFFVGYILFEVPSNLILQRVGARIWIARIMISWGLLSAGTMFIATPVQFYVLRF
LLGAAEAGFLPGVLYYLTHWFPSWRRGRIISLFMIGLPLSSVVGGPLSGWIMSHFDSAHG
LHGWQWMFLLEGLPSVLLGVLTLWLLPDGVDQARWLSEADKAQVRADLAIDAREAPYLKH
RFRDGFLNLKVWMLGGIDFSILLCAYAIGFWLPTFIKKAGVVDIGQIGLLTAVPSVAALA
GMVLLGASSDRLRERRWHIIVPFWLGAAAIVASTFFTQHIVMTVLLFSVAQATIIGAVPV
FFSLPATFLTGTAAATGFALACSLANIAGLVSNSIMGFAMELTGSGSGALWFFAVCLLLS
SLLVLALPAKLVNR