Protein Info for DZA65_RS14770 in Dickeya dianthicola ME23

Annotation: ANTAR domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 PF08376: NIT" amino acids 38 to 278 (241 residues), 183.3 bits, see alignment E=1.1e-57 PF03861: ANTAR" amino acids 366 to 417 (52 residues), 66.8 bits, see alignment 1.1e-22

Best Hits

KEGG orthology group: None (inferred from 96% identity to ddd:Dda3937_01843)

Predicted SEED Role

"Response regulator NasT" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D988 at UniProt or InterPro

Protein Sequence (428 amino acids)

>DZA65_RS14770 ANTAR domain-containing protein (Dickeya dianthicola ME23)
MIADPSTTIRFLMASRQCELNSLRGLLQSGELVGRISQLVHMLQRERGTSNLFLCSDGRL
CADELPQREQDVQQAESQFMAQLDDLAQRAGLLPQASRLFSRAASVVYTLGLLPSLRQQM
RQRVLAQSDAMTVFNDIIRHLLTLVFEVSDTAAEPVIARALVAMFSFMQGKELAGQERAV
GAAAFAAGEFPAGVQQTLLDLIDRQERCFDTFANFADDASREHWQSLATDREFERLRRVA
CTRMPDNLPREGGLQWFALATARIDAMKQIEDRLAQTLMQLCRDRIAAAEQACLDQQADV
ASLMAQQGDDHSYSVFIARSEMGQSAAGQGDWLDSDGVRPQLGRSLLSLVQQQARRLQAL
DHELAAMRATLDERRQIDRAKGLLMQHRGLSEEEAYKTLRRMAMNQNKKLIEIANAMLAV
ADVFQNTP