Protein Info for DZA65_RS14755 in Dickeya dianthicola ME23

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 PF00005: ABC_tran" amino acids 26 to 169 (144 residues), 123.8 bits, see alignment E=8e-40 TIGR01184: nitrate ABC transporter, ATP-binding proteins C and D" amino acids 26 to 257 (232 residues), 328.9 bits, see alignment E=8.1e-103

Best Hits

Swiss-Prot: 83% identical to NASD_KLEOX: Nitrate transport protein NasD (nasD) from Klebsiella oxytoca

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 97% identity to ddd:Dda3937_01847)

Predicted SEED Role

"Nitrate ABC transporter, ATP-binding protein" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y022 at UniProt or InterPro

Protein Sequence (265 amino acids)

>DZA65_RS14755 ABC transporter ATP-binding protein (Dickeya dianthicola ME23)
MRNQPIIRIQQVSQRFSTASGSFLALDNVSFDIHTGETLSLIGHSGCGKSTLLNLIAGLT
APTRGGLLCDNREIDGPGPERAVVFQNHSLLPWLTTYDNVALAVKQVFRGQKMGKAEMHE
WIVHNLERVHMGHALNKRPHEISGGMKQRVGIARALAMKPKVLLMDEPFGALDALTRAHL
QDAVMEIQQRLNTTVVLITHDVDEAVLLSDRVLMMTNGPAATVGEIMTVALERPRSRVAL
ADDPRYHQYRQQVLHFLYEKQPHAA