Protein Info for DZA65_RS14320 in Dickeya dianthicola ME23

Annotation: integrase arm-type DNA-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 PF13356: Arm-DNA-bind_3" amino acids 3 to 87 (85 residues), 88.9 bits, see alignment E=2.9e-29 PF22022: Phage_int_M" amino acids 98 to 191 (94 residues), 86.3 bits, see alignment E=2.1e-28 PF00589: Phage_integrase" amino acids 209 to 383 (175 residues), 68.5 bits, see alignment E=9.9e-23

Best Hits

Swiss-Prot: 56% identical to INTB_ECOLI: Putative protein IntB (intB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 88% identity to dze:Dd1591_1514)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C720 at UniProt or InterPro

Protein Sequence (423 amino acids)

>DZA65_RS14320 integrase arm-type DNA-binding domain-containing protein (Dickeya dianthicola ME23)
MSLNDTKIRNLKPPVTPIKLSDSHGLYLHVKPTGSRLWYFRYYFFGKETRIALGAYPLIS
LSEARQKRDELRKLLAQNINPTQQRAAEKAARSPAKNFKTVALSWHKSNRTWSENHAARL
LASMNNHIFPIIGHLPITELKTRHFIDLLKGIEKKGLLEVAARTRQHMCNIMRHAVHQEL
IEHNPAANLDGIIAPPVKRHYPALLLERLPELLASIEDYKQGRELTRLAVSLTLHLFIRS
SELRFARWSEIDFRNKIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSRQSITILKQIRE
ISGHQELIFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWAQ
DAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDTNREEYVAPYIYAQQHKTA
GAA