Protein Info for DZA65_RS13740 in Dickeya dianthicola ME23

Annotation: NADH:flavin oxidoreductase/NADH oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF00724: Oxidored_FMN" amino acids 3 to 340 (338 residues), 225.2 bits, see alignment E=1.5e-70

Best Hits

KEGG orthology group: None (inferred from 97% identity to ddd:Dda3937_03560)

Predicted SEED Role

"FMN oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y3Q2 at UniProt or InterPro

Protein Sequence (365 amino acids)

>DZA65_RS13740 NADH:flavin oxidoreductase/NADH oxidase (Dickeya dianthicola ME23)
MSKLFSPLALGNLTLPNRIIIAPMCQYSAENGKATEWHMMHLGTLSHSGAGLLILEATAV
LPEGRISPLDLGLWDDDTERALAPVVRGIRKHSAIPLGIQLGHAGRKASTGAPWANRTFL
HPEQGGWQTVAPSALPYHPDDTPPVAMSHDQIKNLIDAFAASAKRADRLGFDLIEIHAAH
GYLLHQFLSPLTNQRDDEYGGSLTNRMRLLREVYMAVREVFPPHKAVGVRISATDAVEDG
WDLAQSIELGHLLRQLGCDYIHVSSGGLSPLQQIHPAPNYQVPFAQKIRQETGLATIAVG
LITEPEQAEAILATEEADAVALARAILFNPRWPWHAAIRLKENVIAPPQYWRCEPHYAKG
LFTPS