Protein Info for DZA65_RS12925 in Dickeya dianthicola ME23

Annotation: TIGR01620 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 transmembrane" amino acids 72 to 89 (18 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 216 to 235 (20 residues), see Phobius details amino acids 258 to 277 (20 residues), see Phobius details TIGR01620: TIGR01620 family protein" amino acids 57 to 341 (285 residues), 413.7 bits, see alignment E=1.9e-128 PF05128: DUF697" amino acids 184 to 340 (157 residues), 184.4 bits, see alignment E=6.9e-59

Best Hits

Swiss-Prot: 75% identical to Y1987_PECAS: UPF0283 membrane protein ECA1987 (ECA1987) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K08990, putative membrane protein (inferred from 95% identity to ddd:Dda3937_03120)

Predicted SEED Role

"Membrane protein YcjF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XYA1 at UniProt or InterPro

Protein Sequence (351 amino acids)

>DZA65_RS12925 TIGR01620 family protein (Dickeya dianthicola ME23)
MNEPLKPRITFDNAPVESAEAPLRPSVAFAEDETQRFVAATTADDDEPDDGESADQVVSD
ALRPRRSLWRRMLGLGVALFGLSALAQGGRSLYQAWVSQDWIALGGVAAGTLIVGAGVGA
LAVEWRRLYRLRQRAETRDRARELLHSHGTGSARAFCENLARQAGLDVGHPALQRWQASL
HDTHNDSEVTALYAHLVQPVLDARARREISRSAAESALMIAVSPLALVDMAFIAWRNLRL
VNRIARLYGIELGYFSRIRLFRLVLLNVAFAGASELVREIGMDWMSQDLAARLSARAAQG
LGAGLLTARLGIRAMELCRPLPWLDDKPRLGDFRRELIGRIRVKTPSPSGE