Protein Info for DZA65_RS12815 in Dickeya dianthicola ME23

Annotation: YdbH family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 867 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF11739: YdbH-like" amino acids 18 to 865 (848 residues), 816 bits, see alignment E=3.7e-249

Best Hits

KEGG orthology group: None (inferred from 91% identity to ddd:Dda3937_03146)

Predicted SEED Role

"Putative uncharacterized protein ydbH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XY80 at UniProt or InterPro

Protein Sequence (867 amino acids)

>DZA65_RS12815 YdbH family protein (Dickeya dianthicola ME23)
MLTLMRYAGWLAALAFVLALGVATACWTMPRWLPGLLRPYLPADVSVVMEATPGWRQGGF
WLPDMQLRLAQCQPATLSGLLVRYREGRWRLEAESLTLDAVCLQQWPVSPSMTAPLLAQW
QQRLPAAELMLHRVAIAPWLTQAGSLQLSTDASRQQLRIQSDQLQLQAELHGAELTLQQG
QMRAATAHPPLLINGAMQLAPALNRVPEQGEVQGQQLPLWLPEPASATLRWHGNQGELTV
SVSSMPEPLLTLPWQVSDGNLRIHDGRWRWPYASQPLTGGIALTLYDVLGLHDPLRLEAR
LNVLTQGHNGRANAVLSLGPGLVGLTDSDIRFQLTGQANLPDLSIFASLPGTVKGAVLDP
TVLLLPGSLLRAWGLPRPTVTLEEARWPLAGIQVTRQGVSGRLQAIVTMRDSYWGRFQLH
LDGKAQQFWPDSGDWRWRYWGEGHLPPLQGRWDIAGHGRWQDDLIEVESLSSGLNQLRYG
VVTVDQPRLALTEPLRWRRDPAAASLHGAFRLAAKQVNLHGGGKLPTTELTVDIRGRNPQ
DFQWRGQLQADPVGPIQLTGRWDGQRLRGNGWWSPQPLRVFQTLLPPAWELAIRSGQFYA
QTAFSAARGQGFRAGGHWVVKNGGAWLEDGEVSGVNFVLPYRFENHRWQLGISRPAALRI
NRLDSVFPVQNIDVQVYGNYPYGERHPLTLAQLDLDVLDGHLSLSPLRLPAHDTAVLRLQ
GIDIGELMTGLRAKKLSMSGRVSGVLPLDFNHPSMLVRDGKFTNDTPLTVRLDPQLADKL
AQNSVANAAAVAWLRYMEIGRSWVTLDLSQRGELSLVSRITGHSVMDDQSRRDIVLNYRQ
QENIFQLWHSLRFGDNLKASLEQQAAE