Protein Info for DZA65_RS12645 in Dickeya dianthicola ME23

Annotation: tail assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 203 PF02413: Caudo_TAP" amino acids 83 to 203 (121 residues), 115.6 bits, see alignment E=9.3e-38

Best Hits

Swiss-Prot: 38% identical to TFAE_ECOLI: Prophage tail fiber assembly protein homolog TfaE (tfaE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 87% identity to ddd:Dda3937_03809)

Predicted SEED Role

"Tail fiber assembly protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XZ66 at UniProt or InterPro

Protein Sequence (203 amino acids)

>DZA65_RS12645 tail assembly protein (Dickeya dianthicola ME23)
MTTQHEDTTQLNEQGLSISSGYIQVYHIDPQTREYIGSTQEYLMEGIGIPAHSFPDAPPQ
AQPQQAILRRSDASGWDSVADYRGKTVYDKQTRQASVISQPGDLPDTLTLLAPASAYDVW
QADGWVTDDKAQQAAQVSAAQQQMAGYLAQAEKRLAVLQYAVELEMATEQETQALKNWKT
YMVQLSRLDVSSAPAIDWPTMPA