Protein Info for DZA65_RS12110 in Dickeya dianthicola ME23

Annotation: Harpin hrpN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 PF04877: Harpin" amino acids 3 to 301 (299 residues), 177.8 bits, see alignment E=2.1e-56

Best Hits

Swiss-Prot: 91% identical to HRPN_DICCH: Harpin HrpN (hrpN) from Dickeya chrysanthemi

KEGG orthology group: None (inferred from 90% identity to dze:Dd1591_1910)

Predicted SEED Role

"Harpin hrpN (Harpin-Ech)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CU46 at UniProt or InterPro

Protein Sequence (340 amino acids)

>DZA65_RS12110 Harpin hrpN (Dickeya dianthicola ME23)
MQITIKAHIGGDLGLAGLGQGAQGLKGLNSAASSLGSSLDKLSGTIDKLTSALTSMMFGG
ALTQGLGAGSKGLGAGNQLGQSFGNGAQGASSLLSPPKSDNDALSKMFDKALDDLLGHDT
VTKLTNQSNQLANSLLNGSQMTQGNMDAFGSGVGNALSSILGNGLGQATNGFSPLSLGTG
GLQGLSSAGSFNQLGNAIGMGVGQNAALNSLSNVSTHVDGNNRHFVDKEDRGMAKEIGQF
MDQYPEIFGKPQYQKDGSSSVKTDDKSWAKALSKPDDDGMTGASMDKFRQALGMIKSAVA
GDTGNTNLNLRGAGGASLGIDAAVVGDKIANMALGKLANA