Protein Info for DZA65_RS11740 in Dickeya dianthicola ME23

Annotation: sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 PF00005: ABC_tran" amino acids 21 to 162 (142 residues), 107.2 bits, see alignment E=1.6e-34 PF17912: OB_MalK" amino acids 241 to 293 (53 residues), 34.5 bits, see alignment 4.7e-12 PF08402: TOBE_2" amino acids 289 to 365 (77 residues), 29 bits, see alignment E=1.4e-10

Best Hits

KEGG orthology group: None (inferred from 96% identity to ddd:Dda3937_04712)

Predicted SEED Role

"ABC sugar transporter, ATP-binding subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XXU1 at UniProt or InterPro

Protein Sequence (375 amino acids)

>DZA65_RS11740 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC (Dickeya dianthicola ME23)
MAEVIFNKLEKVYSNGFKAVHGIDLTIKDGEFMVIVGPSGCAKSTTLRMLAGLETISGGE
VRIGDKIVNNLAPKDRGIAMVFQNYALYPHMTVRENLAFGLKLSKMPKDKIEAQVNEAAK
ILELEELMDRLPRQLSGGQAQRVAVGRAIVKKPDVFLFDEPLSNLDAKLRASMRIRISDL
HKQLKKSGHPATSVYVTHDQTEAMTMGDRICVMKLGHIMQLDTPDNLYHFPKNMFVAGFI
GAPEMNIRPGKLLEENGQITLQVGQYTMSLNQSKQDKVRSYIGKDICFGIRPEYVTVSET
PFDGGHFQGELVRAENMGHEFFMYIKVDGSELTSRMPSDEARLIINNGLNRQVYFKFDMD
KCHIFDAKTEQNISL