Protein Info for DZA65_RS10920 in Dickeya dianthicola ME23

Annotation: UPF0259 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 86 to 109 (24 residues), see Phobius details amino acids 122 to 145 (24 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 193 to 214 (22 residues), see Phobius details amino acids 221 to 244 (24 residues), see Phobius details PF06790: UPF0259" amino acids 1 to 247 (247 residues), 272.5 bits, see alignment E=2.1e-85

Best Hits

Swiss-Prot: 66% identical to Y1998_PECCP: UPF0259 membrane protein PC1_1998 (PC1_1998) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: None (inferred from 94% identity to ddd:Dda3937_00568)

Predicted SEED Role

"Membrane protein YciC, linked to IspA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4DRG0 at UniProt or InterPro

Protein Sequence (250 amino acids)

>DZA65_RS10920 UPF0259 family protein (Dickeya dianthicola ME23)
MPITASRLYRDTLNFTRNQFFSILMLALLTSLITVVLGHVFTPGSDQLQLLSNSNVDLSA
IEQPGISDIIQQLSPEQQMVLLKASAAGTFATLVGNALLTGGILMLIQLVSAGHQTSALR
AIGASVPLLPRLFFLILGCTLLIQLGMLLVVVPGILLSIAFSLSPVIAVIEKRGLVASMR
ASSKLAFAHFRQTAPAVLLWLLAKVALLLLLTRLPVVSPTAIAVILNGISNVLSAMLLVY
VFRLYMLARG