Protein Info for DZA65_RS10345 in Dickeya dianthicola ME23

Annotation: YceH family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 PF04337: DUF480" amino acids 5 to 158 (154 residues), 206.1 bits, see alignment E=1.4e-65

Best Hits

Swiss-Prot: 75% identical to Y1804_PECCP: UPF0502 protein PC1_1804 (PC1_1804) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K09915, hypothetical protein (inferred from 92% identity to ddd:Dda3937_01604)

Predicted SEED Role

"Protein of unknown function YceH" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C3K4 at UniProt or InterPro

Protein Sequence (214 amino acids)

>DZA65_RS10345 YceH family protein (Dickeya dianthicola ME23)
MKYQLSPREARIIGCLLEKQVTTPEQYPMSLNGLSAACNQKTNREPVMDLSENEVQQTLD
LLVKRHFLRTVSGFGNRVMKYEHRFCNSEFGDLKFSPAEVALATTLLLRGAQTPGELRTR
AARLYEFADMDEVENVLQQLQQREDGPFVARLTREPGKRESRFMHLFSGEVADVAPSEPV
DEPTEGGLAARVTALENEVAELRAQLAALQASLA