Protein Info for DZA65_RS10205 in Dickeya dianthicola ME23

Annotation: right-handed parallel beta-helix repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF22842: Pel9A-like_beta_helix" amino acids 28 to 334 (307 residues), 331.3 bits, see alignment E=7.8e-103 PF07602: DUF1565" amino acids 33 to 186 (154 residues), 29.6 bits, see alignment E=6.9e-11 PF13229: Beta_helix" amino acids 146 to 321 (176 residues), 36 bits, see alignment E=8.2e-13

Best Hits

KEGG orthology group: None (inferred from 97% identity to ddd:Dda3937_03201)

Predicted SEED Role

"Pectate lyase L precursor (EC 4.2.2.2)" (EC 4.2.2.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.2.2.2

Use Curated BLAST to search for 4.2.2.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XWX3 at UniProt or InterPro

Protein Sequence (439 amino acids)

>DZA65_RS10205 right-handed parallel beta-helix repeat-containing protein (Dickeya dianthicola ME23)
MKVNKKFLPAIIGCVLAGTAAQSLAAEYYLAPNGSDSANGNKSAPWKSFARAQQTLSPGD
RLWVRGGTYNVTAGLNSCASQTDIVNAITLNKSGTSGNRIEYVAYTGEKPVFDFSQMKDD
CRVKGFNVVASWVTLRGLEIKGVPQNNNKNHESWGVWINGSNNRFEQLDIHHIMGTGLFL
KNGANNTVLNSDSHHNYDPLTSNGAGQSGDGFGAHIAANMPGNVFSGCRAWANSDDGFDL
INAYSSVTIENSWAWSHGYLPGTTTSLAAGNGNGFKAGGYGALYVSNAPKHVVRNSVAFL
NKAAGFYANHHPVANDFFNNTSFNNTVNYSMRGIDASGNAIALGTLRNNISYAARSQSLA
YTDGANMRYNSWNFSNAISDAEFQSVSTTGWDAARQADGNLPVLKHLRLASDSWMIDKGG
DVKIAYKGAAPDLGAFELK