Protein Info for DZA65_RS10165 in Dickeya dianthicola ME23

Annotation: DUF496 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 112 PF04363: DUF496" amino acids 10 to 102 (93 residues), 154.3 bits, see alignment E=3.9e-50

Best Hits

Swiss-Prot: 89% identical to Y2560_PECAS: UPF0265 protein ECA2560 (ECA2560) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K09802, hypothetical protein (inferred from 98% identity to dze:Dd1591_2312)

Predicted SEED Role

"UPF0265 protein YeeX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CD90 at UniProt or InterPro

Protein Sequence (112 amino acids)

>DZA65_RS10165 DUF496 family protein (Dickeya dianthicola ME23)
MEKGNTKPCFQDVLEFVRMFRRKNKLQREIADNEKKIRDNQKRVLLLDNLSEYIKPGMSI
EDIQNIIANMRSDYEDRVDEYIIKNAELSKERRDLSRKIKEMGEIKPPVEAK