Protein Info for DZA65_RS09810 in Dickeya dianthicola ME23

Annotation: DUF2593 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 47 to 69 (23 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details PF10767: YbjO_DH-like" amino acids 3 to 143 (141 residues), 218.8 bits, see alignment E=1.4e-69

Best Hits

Swiss-Prot: 40% identical to YBJO_ECO57: Inner membrane protein YbjO (ybjO) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 98% identity to ddd:Dda3937_03473)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D1N1 at UniProt or InterPro

Protein Sequence (145 amino acids)

>DZA65_RS09810 DUF2593 family protein (Dickeya dianthicola ME23)
MFAPVAIMVAGSAIIATRCLGIVLTISELGLSGFGGWLSSSAKQWDSTLVLLAALLVVCL
EIRCGFAVLSGLNWGRWCFLLTQCLVTVYMLTASLVEFLPPIFHVSGDGVGEILHHVLMQ
RLPDFLLILLLFLPRRSQRFFTRYP