Protein Info for DZA65_RS09165 in Dickeya dianthicola ME23

Annotation: peptidase M3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 621 PF01432: Peptidase_M3" amino acids 151 to 553 (403 residues), 82.2 bits, see alignment E=2.7e-27

Best Hits

KEGG orthology group: None (inferred from 96% identity to ddd:Dda3937_02891)

Predicted SEED Role

"probable peptidase VC1983"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XWI5 at UniProt or InterPro

Protein Sequence (621 amino acids)

>DZA65_RS09165 peptidase M3 (Dickeya dianthicola ME23)
MQQAKAYFDALNRNYLAAHQTKEDLFWQRYMGTGDETVSVRFAEAESRWKRFISQASRLA
ELRQHLAAVDAAPASEARDALLHGLRGWYRFFDCNVIEDPQAQALMDELIAAENDLFSRR
KTHQPTHLNEQGERVSASLGELLTNQATNDNEEYRRSSQQALRELEQWLVNHGFPALVSL
RNRFARQMGYRNYFDYKVNKTERMTPEQLFAILDRFEAQTRDANLRSLRQLAAEKGEAAL
QPWNVRYASTGDVTRQLDPYFPFAASLSRWVNSFKRLHIGFSGAQMQLDLLVRKGKYENG
FMHQPVPPFVDQGQWLPARINFTSLAQPDQVGSGASGINTLFHEGGHAAHFANIRQNAPC
FAQEFPPTSMAYAETQSMFCDSLLQDADWLKRYAHNAQGEPVPDALIQADIRARQPIRAF
NERHILLVPYFEWQLYCMDDAQRTPEAILQLARDTEQRILGISGSPRPTVAIPHLLSMES
ACSYQGYLLAMMAVEQTRHFFLQRDGYLTDNPAIGPDLARHYWQPGNSVSHDDTLRSLTG
EGFNPDYLARECNLTVDEAWRQAQATIAAAVARPQPAADFDLNARIQVVDGDEVLADNQY
GDDAMCQAFARVIDHAYPAHA