Protein Info for DZA65_RS08900 in Dickeya dianthicola ME23

Annotation: discoidin domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 745 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00754: F5_F8_type_C" amino acids 370 to 497 (128 residues), 48.9 bits, see alignment E=7.4e-17 PF22633: F5_F8_type_C_2" amino acids 384 to 468 (85 residues), 39.5 bits, see alignment E=7.3e-14

Best Hits

Predicted SEED Role

"Phage tail fiber protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CEL3 at UniProt or InterPro

Protein Sequence (745 amino acids)

>DZA65_RS08900 discoidin domain-containing protein (Dickeya dianthicola ME23)
MWYKAGSLSLFSGSKVVLGNNTAWADKSNSIIAGGMLLIFADCSIKIYEIASVVSDTELV
LASEYIGCTENGVQYAVPVFGSDDKFDHAAYVAQVAAMLAGYQSQLTQWKQVLTEHGQVT
LTDNNGQNVVVKTLPDLTDAVSRMMDKTLNGADIPDKAQFVANLGLSDVARKSDLTNHTH
TASQITDFTDAVRKVLVTTLAAGQGVALNYDTSSSQLVVSATGGNSSGGNNGGGGYTVVT
RMGTTANQVFSFPLSLNGPISLNGPISLNGQMDYNFDAYALKEESELTSQTVAIDTFSNT
SVANYDQTNNVVFDGQLKPYTGETYSIGSDGSFYSSIIKADGASLSVSSYSMSTVVPVMT
SASTPAGYVASASSAYNASYAAYYAFDGSVSMNGWISANAPTAAAPQWLEIELPSQTQIT
GYIITNPNLTIGGLASPKSWLLQGSNDGSVWTTIHSVSNNTNNTADIDQEFPLSVAANYS
KYRLYITDRNSSYSFVSVKKLKLVVGDKCLISDSFGNFYTASSGVLTKVNSPSSALEFST
FGFVYSGVISRSTLSDKLPIKVWLASNPTNNYVRTSYGPPPQIIIPKSLTSVRSWQMINS
AQLSATLSGKGAVSVAVSRDLNNWVVWNGSSWVSIGSLSADGNGANKLVSDGMSVSSLNQ
ITTAQWALLFPNTNGVPDALAFALALNVPDPSGDNAAVDTLVLNVNNVSAWKKQTEAEVE
IRWYPDKVSFKTVAAGNYKLAYQQP