Protein Info for DZA65_RS08510 in Dickeya dianthicola ME23

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1021 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details transmembrane" amino acids 339 to 357 (19 residues), see Phobius details amino acids 364 to 384 (21 residues), see Phobius details amino acids 391 to 415 (25 residues), see Phobius details amino acids 431 to 454 (24 residues), see Phobius details amino acids 467 to 490 (24 residues), see Phobius details amino acids 527 to 548 (22 residues), see Phobius details amino acids 861 to 879 (19 residues), see Phobius details amino acids 886 to 908 (23 residues), see Phobius details amino acids 914 to 935 (22 residues), see Phobius details amino acids 963 to 982 (20 residues), see Phobius details amino acids 988 to 1012 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 9 to 1010 (1002 residues), 502 bits, see alignment E=1.6e-154

Best Hits

KEGG orthology group: None (inferred from 97% identity to ddd:Dda3937_01223)

Predicted SEED Role

"Cation efflux system protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D6L1 at UniProt or InterPro

Protein Sequence (1021 amino acids)

>DZA65_RS08510 efflux RND transporter permease subunit (Dickeya dianthicola ME23)
MSESRFNLSALAVRERAITLFLIFLIFVAGVLAFFQLGRAEDPPFTIKQMTIITAWPGAT
AQEMQDQVAEPLEKRLQELRWYDRTETYTRPGLAFTMLSLKDSAPPSEVQEEFYQTRKKM
GDEAKKLPAGVVGPIINDEYADVTFALFALKAKGEPQRLLVRDAEALRQQLLHVPGVKKV
NIIGEQPERIFVSFSHDRLATLGVTPQDIFAALNNQNVLTPAGSIETKGPQVFVRVDGAF
DNLEKIRQTPIVAQGRTLKLSDVATVERGYEDPSTFMVRNNGEPALLLGVVMRDDWNGLK
LGQALEAEVTNINATLPLGMTLSKVTDQAVNISSAVDEFMVKFFVALLVVMMVCFLSMGW
RVGIVVAAAVPLTLAAVFVIMAASGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEE
GYSRIKASAYAWSHTAAPMLSGTLVTAVGFMPNGFARSTAGEYTSNMFWIVGIALIASWV
VAVAFTPYLGVKMLPDIKKVEGGHDAIYNTRNYNRFRQVLGHVIARKWIVAGTVITLFVV
SVLGMGAVKKQFFPTSDRPEVLVEVQMPYGTSIEQTSIATAKVEAWLAQQKEASIVTSYI
GQGAPRFFLAMSPELPDPSFAKIVVLAGNDKERETLKFRLREAIAGGLAPEAQVRVTQIV
FGPPSPFPVAYRVMGPDPDKLRAIADEVGTVMRASPMMRTVNTDWGPRVPTLHFTLNQDR
LQAVGLTSNSVSSQLQFLLSGIPLTEVREDIRSVQVVGRAAGDIRLDPARIADFTLVGSA
GQRIPLSQVGSVDVRMEDPILRRRDRTPTITVRGDIAEGLQPPDVSTAVMTQLQPIIDRL
PSGYRIEQAGSIEESAKATEAMLPLFPIMIALTLLIIILQVRSMAAMVMVFLTSPLGLIG
VVPTLLLFQQPFGINALVGLIALSGILMRNTLILIGQIHHNEQEGLDPFRAVVEATVQRA
RPVILTALAAILAFIPLTHSVFWGTLAYTLIGGTLAGTVLTLVFLPAMYSIWFKIRTVRH
A