Protein Info for DZA65_RS08295 in Dickeya dianthicola ME23

Annotation: Tat pathway signal sequence domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 926 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF19501: PcRGLX_1st" amino acids 45 to 124 (80 residues), 94.8 bits, see alignment E=3.3e-31 PF21345: PcRGLX_2nd" amino acids 136 to 492 (357 residues), 471.4 bits, see alignment E=2.8e-145 PF21346: PcRGLX_3rd" amino acids 498 to 919 (422 residues), 572.9 bits, see alignment E=8e-176

Best Hits

KEGG orthology group: None (inferred from 95% identity to ddd:Dda3937_03015)

Predicted SEED Role

"FIG00904692: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XVP5 at UniProt or InterPro

Protein Sequence (926 amino acids)

>DZA65_RS08295 Tat pathway signal sequence domain protein (Dickeya dianthicola ME23)
MPLHDTSRRRFIRNGALLALSAPLWNRALAARTPGAGAAADATPTVRLNWLERQPPASFG
GVTWGVPWPQGQVPADSGFVLGEDGQADRALQSWPLAYWPDGSLKWSAHALGAEHPPGHR
LSLRPAPPSAATGGAIVTETAQHWVVDTGRLRCQVPKNGERLIDELRQDGWLALGNARLV
LQIQSGEGTDGPLTVQAFQGQATHVTLEQNGPQRAVIALRGVHRHAAADGVTRLPFVVRL
YFYAGSASLRLLHTIIYDGDERQTFIKGLGVAFDAPQQGELHDRHIRFTSAQGGLFREAV
RGLTGLRRDPGEAVVAAQLAGKATPPVTQFPPAVGKRLDYIPTFGSYRLTQHHPDGYQIH
KRTAAGQGWLLSATGQRASGTGYLGSPTGGVAFGIRHFWQSYPACLEIQRAHTDLATITL
WLWSPYAEPMDLRFYHDGMGQESTEQQREALEITYEDYEPGFATPEGVARTSELFLDVLP
ATPDSDTLLAIARRHQQPPLLVADGADLQRAGAFGPVWSPATPGHKPQPALDAQLAWYFD
FYQQEVEQRKWYGFWDFGDVMHTYDGDRHVWRYDVGGYAWDNSELSTDLWLWYYFLRSGR
ADVFRMAEAMTRHTGEVDVHHAGRFQPLGSRHNVRHWGDSAKQLRISTVANRRFLYYLTA
DERIGELMDEQVDALRTLQRVMPGRKIGQQPPTGEHLVSLYFGTDWGAVAAAWLTAWERR
HDAAIRDRLLNSMQSIAAQPHGFFTGLAEMDPDTGLFQPAAADQLFISHLSAVFGLAEVC
AELLQVLPDPAFERVWLDYCRLYNDPKALSAFVGQPVKKRNLVQGHARLSAFAGWRQRDK
ALIRRAWREFADGEGGIVHPNRRVRLLTPPAVLYPVKEAQIDSSIDQRSGSTGVTNLSTN
AVAQWGLTAIAMLALAGDAPPKTPFR