Protein Info for DZA65_RS08135 in Dickeya dianthicola ME23

Annotation: RraA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 PF03737: RraA-like" amino acids 33 to 171 (139 residues), 130.6 bits, see alignment E=3e-42

Best Hits

Swiss-Prot: 34% identical to RRAAH_BACHD: Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase (BH1938) from Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)

KEGG orthology group: None (inferred from 90% identity to ddd:Dda3937_02844)

Predicted SEED Role

"Putative siderophore biosynthesis protein, related to 2-demethylmenaquinone methyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XVL6 at UniProt or InterPro

Protein Sequence (205 amino acids)

>DZA65_RS08135 RraA family protein (Dickeya dianthicola ME23)
MSYQIIPRVPPLSDDLLAGYRHISTSTLGHLTETGYLHGIRPLLPDVQMVGNVVTVKLCP
PDGGVLREALLLSQPGDVLVVDASDEEARACWGELRALAARVKGLAGVVVAGAVTDSRAL
RQLGLPVFCKGVSAITTRTLGTAGAVNVPVTIAGVTVHPGDVAVGDDDGVFILSRATARD
WLEPALSKEHADAQRRDALRRKWGK