Protein Info for DZA65_RS08080 in Dickeya dianthicola ME23

Annotation: AcsD protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 623 PF04183: IucA_IucC" amino acids 159 to 388 (230 residues), 157.1 bits, see alignment E=5.8e-50 PF06276: FhuF" amino acids 418 to 577 (160 residues), 127.3 bits, see alignment E=8.3e-41

Best Hits

KEGG orthology group: None (inferred from 93% identity to ddd:Dda3937_02854)

MetaCyc: 93% identical to achromobactin synthetase protein D (Dickeya dadantii 3937)
6.3.2.-

Predicted SEED Role

"Achromobactin biosynthesis protein AcsD @ Siderophore synthetase superfamily, group A"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XVK6 at UniProt or InterPro

Protein Sequence (623 amino acids)

>DZA65_RS08080 AcsD protein (Dickeya dianthicola ME23)
MNNRNHDVLSTMISEKAALHGLLNCLIKEFAIPEGYLRYDWPDEMKGIPPGAYFDGADWK
GIPMMIGLPDSLQLFVIVDRRDTFGSQHYLSDVYLRQAPGDWQCPDFEPLVARLLAACEH
IAGRTNPELYEQILQSQRLVSAIISHNGRQRTDAPLQHYLQSEQGLWFGHPSHPAPKARL
WPAHLGQEQWAPEFQAQAALHQFEVPVDGLHIGANGLTPQQVLQGFADQQSASPGHAIIC
MHPVQAQLFMQDARVQQLLRDNVIRDLGQSGRIASPTASIRTWFIDDHDYFIKGSLNVRI
TNCVRKNAWYELESTVLIDRLFRQLLDQHADTLGGLVAAAEPGVVSWSPVAAGESDGHWF
REQTGGILRENFCRRTGAECSIMAGTLFARGVDLQPMIHTFLHTHYGEALDDNTLLCWFD
DYQTRLLRPVLSLFFNHGVVMEPHLQNSVLVHQHGRPQQVLLRDFEGVKLTDDLGIRYIP
DDIPPRVRQSLLYSREQGWNRIMYCLFINHLSEAILALSHGRPHLAPLMWQRVRQQLRAI
QGELKQPSPELDALIAGHPVACKTNLKVRLAAEADRQASYVRLPSPWGHAAQAQHGSGIV
HGSGIAHGEAQRVEVRHSEVQHG