Protein Info for DZA65_RS08075 in Dickeya dianthicola ME23

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 704 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF07715: Plug" amino acids 42 to 146 (105 residues), 57.8 bits, see alignment E=1.4e-19 PF00593: TonB_dep_Rec_b-barrel" amino acids 251 to 668 (418 residues), 104.8 bits, see alignment E=1e-33

Best Hits

KEGG orthology group: None (inferred from 94% identity to ddc:Dd586_2585)

Predicted SEED Role

"Outer membrane receptor proteins, likely involved in siderophore uptake"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y0I4 at UniProt or InterPro

Protein Sequence (704 amino acids)

>DZA65_RS08075 TonB-dependent receptor (Dickeya dianthicola ME23)
MKVRALYALTPLFLFAQANAADSTNKNDSEMVVTASRTDTEKKDSPQVVTIITKEQIEQQ
RQITSDSSQILSNLLPSMAPSRQKMSGSGETFRGRAPLILVDGIPQSNPLRPTGREMHTI
DFAMVDRIEVIHGASASNGIGATGGVINIITRRPEPGSFNQHFSVETTSPTKVSSDSMSY
KTTYGFSGREEYLDYLFSVSYEDQGLFMDGKDRPIGVDNTQGDLMDSRAYDVMAKVGYWL
DNDQRIQFSLNRYQLKGKMNYLGVAGDRNNGVPTTSISGRPIGDAPMNSVWTTSATYENY
NLAGMKLNSLVYYQNYESLFGADNSASFQDIRIAPLNQLYDQSRVTSNRYGSKVALTKDD
IWDDYLKATVGFDTLFDTGKQDFWLTKRLYAPQMEYTDLSPFMQFDIQPIESLKITTGVR
YEYARLDIDSFRTVAASTARAPNNSVDVQGGRLSFSKTLYNVGAVWTTPYQPLSLFANYS
QGFGIPDVGRTLRGIRTAGQSVSMLPLEPIVTDNVETGLRIQKDPVEFELSYYRSTSKLG
ERVVDVSGTFQSERQKTRIDGIETSLGYKVNDDHRLKFGYSHIQGWYDSDGNGSLDGKLD
GLNIPPDRLTVSWSANWTPQWSSFIQANYAFDRVMDNRQQDFDGYLLMDAAVGYKLPKGK
INLAVSNLFDKEYITYYSQSAIVNSLRYFSGRGRTVTLGYSVDF