Protein Info for DZA65_RS07535 in Dickeya dianthicola ME23

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1939 PF00270: DEAD" amino acids 120 to 216 (97 residues), 33.1 bits, see alignment 4.7e-12 PF00271: Helicase_C" amino acids 1194 to 1245 (52 residues), 29.1 bits, see alignment (E = 1e-10)

Best Hits

KEGG orthology group: None (inferred from 79% identity to dze:Dd1591_1467)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XXJ0 at UniProt or InterPro

Protein Sequence (1939 amino acids)

>DZA65_RS07535 DEAD/DEAH box helicase (Dickeya dianthicola ME23)
MLDPIGGFRRIQDFFISYIETNFRIADPLVAASRRKLLNSSGEFAAEPYIEPVLRYESSD
KTLEDLADMENGPLNSLSPEGRRAFVELALSGLFDSKFGDATWPRRSVHAPYLHQVEMLE
RGIRPGRPGIVTSGTGSGKTESFMLPILAALSNEAVHWTKPDNGYLQHRWWNGEKTNWVS
RREGEKRQAAVRALVLYPMNALVEDQMARLRRTLDSDDARQVMENHFAGNRIFFGQYTSA
TPITGYANHPRLSSVTSEKSRRARNLEKLRKAFKRIDCDQQAARAFDEKEKSLEKTRYIF
PSTDGGEMVSRWDMQAAPPDVLVTNASMLGAMLSREVEDDIFDVTRDWLVNNDDAYFYLV
FDELHLIRGSAGTETAMLIKSLIIRLGLDDPKHRYKLRLLASSASLPMDGADGEQSRKYL
RDLFAPFGTCRDSLDAGSHKPDFWQDCVIEGKPFIPKPERKVDARPFSALMQMVLTQQGG
TARRLEMTDELNRALLNAFLALGVKEQNNRQRIKQAVEIAAALLTNACIEKNGDKPRATS
PKYIINKIFLEESWGGKEDAELALRGLMLLRALPDSGLDCEKPHIATPAFRVHTFVRNIE
GFFASVSPGEQKAKFADFCLERGLSHAPSASGEKRGQRLFEMLYCEACGDLLLGGQKGQS
SAMVELLPSATNLENLPERPGAEYYDDMALDEFAVFWPAEKTPAASEKDWDVWEKAELNP
ATGIVTTGWDISATNIGTVRGYLYFQNSVKPKKDELAKKPSAQPFCCPNCGIDYSNRPAT
NRTRTPIRAFRTGVTKSSQLVATELFELLHAIGADPKSIVFSDSRQDAASMALEIERLHL
RDLRREILVTAARAMISEAEKEYITEEEFREKRDKAIQARDDDEIDRLYELKNNQKGIAS
LCKFGRVKIDSLLESEGDSIGKISSELAGLGISPYKYSPSADGNDKAVWYDSFVKDENIV
KYHEKLSLSDRLAIKQRIIDDQSELIDDVIFANTFFALEETGLAYPCISDNEDTPDLDAW
LRVFAGVYRIKDNKYFDSEQSVEWNIGKDITKEKIKRVAKALFGENNYLDNLTQVLNQFA
ARGHTSGFFNIGKLFLKVAKPGDPYWQCSNCERIHLHLGFKHCTRCAEPLDIKPRGIVET
LWENNFLGKRIVRGERDGVKRFRLNVEELTGQTDDFSDRLRKFKGIFVDKMSELEKLDAE
IDMLAVTTTMEVGIDIGSLQSVYQANMPPQRFNYQQRVGRAGRRGQAFSFVITFCRGRTH
DAYYFAHPSAITGDPPPPPFLAVDHDAISLRLLRKVWLRAAFNLLREEDHKNGITFPGDK
LVPPDIHGEYVSTHDYYYNDEVNWAERLEGALEATRNIGERFIKAATFAPEQTEQRQRLY
SALNVEEMINEIAELHAFAPDDSVGLARFLAERGKLPMYGMPTRVRNLYLGLRKTKGLND
QTEYEWSTMDRDLDLAVFEYAPGSILIKDKKKHEVIGFTGNYREPQVKNNRVEELSTVGQ
WLESCNYVAICPACGSAKLELHQPVDDINCEDCDLPINPSEFKLYITPAAFRTDFAPKDD
IDSFTRMSLKTTATVLYKGTSENCDSFVVRRGAVTILRLNDGPINGEKEGEQFTVNLATD
KKAPIPITTYHAPIKGIQAIDSNWNGLRNNFRWQCTTEKKSFGLVSSKETESLHLELTKF
DSRLNLNMVARYGDYMNLPTRAAAISATQILTHKAALCLDVSPDEFETLEPRLHHGKPIL
QIADALINGSGLCRRLAEPYSAEGSPLIVTLLHQILEDKNDWPMIDFLEKDHPSQCQTAC
YKCIQRYGNRRYHGLLDWRLGIAYLRAMVIPEFACGLNDDDWNYPEMNRWKERAFELAAD
VEALRPETIKLLKRYSLPVLEIQDEKELWRAVVTHPLWHKHDALIDSFRLANEGAQLRFI
DTFELERRPLQALANLKRG