Protein Info for DZA65_RS07515 in Dickeya dianthicola ME23

Annotation: ATP-grasp domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 PF02655: ATP-grasp_3" amino acids 104 to 276 (173 residues), 39.9 bits, see alignment E=7e-14 PF13535: ATP-grasp_4" amino acids 141 to 277 (137 residues), 56.6 bits, see alignment E=3.7e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XVL0 at UniProt or InterPro

Protein Sequence (398 amino acids)

>DZA65_RS07515 ATP-grasp domain-containing protein (Dickeya dianthicola ME23)
MTVRKIIMVGSQDEIFEELPPEDIELYVIQPSALIGPRLRAAAKDIYAIDAFNDEQVLAG
ARYFCGRHAIDGLFSFTEYGLLPAANAAKALALPGISAEITELCRNKWKLREKLAATSLH
VPFVMFDNHAALTQFAGENGFPLVLKDPCGVGSINVKICHSLAEALAFFDELQQQGYACV
LAEKYVEGTEYSVETLSIRGCHQLIGVTDKYLLPGGVVEHKHVYPAYLTVEARAGIERYI
CRLLEQIQHRHGPMHIEVKVDGEQIYLIEINNRPGGDYIWDMVNKVSGVNLVAETLKYAF
SGQPDAEERKARRRYGAMSYIALFKPIPTSTIRQALDNMAVLDRVQCQIFSQSSKREIRN
SFERPGFVLIGEKNVAALCAALPSIETWIESQSHQQGE