Protein Info for DZA65_RS07475 in Dickeya dianthicola ME23

Annotation: phosphonopyruvate decarboxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 PF02776: TPP_enzyme_N" amino acids 6 to 105 (100 residues), 37.6 bits, see alignment E=1.7e-13 TIGR03297: phosphonopyruvate decarboxylase" amino acids 15 to 362 (348 residues), 390.6 bits, see alignment E=3.3e-121 PF02775: TPP_enzyme_C" amino acids 220 to 336 (117 residues), 62.6 bits, see alignment E=3.9e-21

Best Hits

Predicted SEED Role

"Phosphonopyruvate decarboxylase (EC 4.1.1.82)" (EC 4.1.1.82)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.1.82

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CD72 at UniProt or InterPro

Protein Sequence (372 amino acids)

>DZA65_RS07475 phosphonopyruvate decarboxylase (Dickeya dianthicola ME23)
MENALHFTRQLKQAGFNFFSGVPCSFLTQVINQAIADPELDYVPATSEGEAVALAAGAWL
AGKQAVVMCQNSGLGNMVNPLTSLNAAFDIPVLLVVTHRGKPGIKDEPQHRLMGKITPEL
LALLGIPATVLPADATAMREVIAHAMHLVRDEQKTAALIVEKGIFSEATPVVKETGGLPE
RATVLELLLNLAGERDFLIATTGKTGRELFTLKDRVNNLYCVGSMGYASALAQGIALYAP
QRTVTIIDGDGSALMHPGNMATIGHLRSSNLIHLLLNNGAYDSTGGQKTLADGVDFSLVA
RGMGYTHAQYCSTLTELADAYRYAQMHDHGPVLLIVNIANGSMGELGRPTITPEQIARRL
QHQIKESFFHDC