Protein Info for DZA65_RS05935 in Dickeya dianthicola ME23

Annotation: protein deglycase YajL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF01965: DJ-1_PfpI" amino acids 4 to 170 (167 residues), 150.7 bits, see alignment E=1.7e-48 TIGR01383: DJ-1 family protein" amino acids 5 to 183 (179 residues), 214.9 bits, see alignment E=3.7e-68

Best Hits

Swiss-Prot: 71% identical to YAJL_ECOLI: Protein/nucleic acid deglycase 3 (yajL) from Escherichia coli (strain K12)

KEGG orthology group: K03152, 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis (inferred from 96% identity to ddc:Dd586_1019)

MetaCyc: 71% identical to protein/nucleic acid deglycase 3 (Escherichia coli K-12 substr. MG1655)
4.2.1.-; RXN-17632 [EC: 3.5.1.124]

Predicted SEED Role

"DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.5.1.124

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CI78 at UniProt or InterPro

Protein Sequence (199 amino acids)

>DZA65_RS05935 protein deglycase YajL (Dickeya dianthicola ME23)
MTASVLVCLAPGSEEIEAVTTIDLLVRAGIRVTTASVASDGSTEITCSRGVKLIADAPLV
AVADHDFDAVVLPGGLQGAECFRDSPLLIERLRQTHQEGKIVAAICASPAVVLEHHQLFP
VGNMTGYPTLKAQISPEKWLEKRVVFDPRVNLLTSQGPGTSIDFALKLIDLLLGKDKAAE
IAAQLVLPPGIYNYYQDPA