Protein Info for DZA65_RS05100 in Dickeya dianthicola ME23

Annotation: DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1207 PF13086: AAA_11" amino acids 906 to 956 (51 residues), 30.2 bits, see alignment (E = 6e-11) PF13087: AAA_12" amino acids 1063 to 1186 (124 residues), 48.5 bits, see alignment E=1.2e-16

Best Hits

Predicted SEED Role

"FIG01224737: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CQI1 at UniProt or InterPro

Protein Sequence (1207 amino acids)

>DZA65_RS05100 DNA helicase (Dickeya dianthicola ME23)
MTTRQYAQKSIFDLEAIFEQSRNNASELERLLNELTFRNTAKARTLKTKIEQALTALSDH
SVIPMLCSNPSAHHPSSASTQFSQVAPCDAPAMAVQLGPKTTPDPVMRQPFGNDQIDLGP
LPSFYPSGKANDARAILAAWTALEALSPQGYKRPEDMATGDRSRVALLERGVPWGANARS
KPNHKLYFEVVLGAIALDKATDELVKVFGEDEERSRPDGKKAAIGSILIDKEGYVLEDKC
VAVSSFAWALKPALDLKLGSLGNWPNVEPRIIEHLDRMVRRYNEDGEPIPIDLNVVLNAY
KWLVTQFGVPEHLVEPPTFALKVFQHFKAKAPPEPSLLNSFYIEDLGEAAELIAGGKAGT
GLRRYMGIDRPDQKIDVLSPISAVEPFVAPSLMPQARWPSQGGHPLVLLQQAAVNAARAE
LIDTPGIIGVNGPPGTGKTTLLRDIVVGCILDRATAMSGFNKPQDAFSTTGEKLAFGSNA
FLHFYRLHASLKGHEIVVASSNNKAVENVSKELPLKEANGRHEQIAYFRSISDLIANPKR
AGYFEAEGDTLSDPIETWGLIAAVLGKSSNRGAFQQGFWWNEDGGFLTYLKAARGINVMR
EIKDERTGAIIDRVMPSVVVNEQPSTNEADAAAAWQKARTAFLKLKETVDAEIASIEGMR
RDIRALKGASTELQRLKQRRPSLNEAVEQAHQIAESCHREHEKAKLQIEQDKTLLNSHLA
GRPGFFSRLFGTATWKSWRSTLQKLSATLQQSVLRAQGTDDALEIARTEWSNAQSQLQQL
DHEISSRCQAVSELKATEAQARNRMGDRVVDETFFEREHEAIHLTAPWLPDEVHRLREDL
FAAALAVHKTFIDASASRLQHNLGLLMSGMVAGAFQSPAHRGLLPDLWSSLFMVVPTVST
TFASVRTMFGDLPPESIGWLLVDEAGQAVPQAAVGAIMRAKRSIVVGDPLQIPPVVSLPG
KLNAEICKFFDIDQSEWSAPAASTQTLADQASRFKSTFVTDIGDREVGLPLLVHRRCQNP
MFDVSNSIAYAGQMVHAVGPKRPGSIGSALGQSRWIDVNGDAEAKWCPDEGDAVVRMLKE
LAASGITNPDVFIITPFKIVEQNMRRRLDSETDLLRAFGVKLDEWSRDRVGTIHTFQGRE
ADTVILLLGAPKASQQRARQWAASPPNIINVAVSRAKQNLYVVGSAAAWAGAGTSLQVLQ
RQLAQST