Protein Info for DZA65_RS05085 in Dickeya dianthicola ME23

Annotation: conjugal transfer protein TraG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 516 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 30 to 47 (18 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 361 to 379 (19 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details amino acids 448 to 471 (24 residues), see Phobius details PF07916: TraG_N" amino acids 8 to 482 (475 residues), 185.2 bits, see alignment E=1.2e-58

Best Hits

KEGG orthology group: None (inferred from 70% identity to ypi:YpsIP31758_3699)

Predicted SEED Role

"FIG00635582: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4DE41 at UniProt or InterPro

Protein Sequence (516 amino acids)

>DZA65_RS05085 conjugal transfer protein TraG (Dickeya dianthicola ME23)
MTTQSYLEYFLVFFGWLLNNAMWNILNGTGLYLLPVVFKIVGIWLKVREEGADEGNKGAL
VLPRVEHAAYLSFCVIMFCCVPLLPVDVSTIKFDSSRAQQCGFNVPSPQNSGYKALVNDF
DGKTAEVPVWWYFVHVISKGTTQAMIASIPCGKQLRQIRFEVQSTKLRDPILLSEIRAFA
DQCYSRAYFKLKNSNSALSDATINSVGWIGSSYFLNTSGYYDYYTSTEPRSQWPYEASRD
SGYPDVGRGGYPTCKQWWSDSTNGLKARVMAGLSDNTREYLKRNYTQAQAEEIALRWLVS
PKNVGLSEGGETYATGSAGVGSSGFTGALTQVASSFGLGMKQTEALPGFDAMKQALPMIQ
ALLEMMIVITIPAIVMFSGYEIKTVVTISFALFALIFISFWWELAGWLDDRLITILYSAM
MEQGLAGVDAQSSNLPIIDFMTSPRDGWIMNLVLGMMYLVFPMGWVGMLSWTGATVGNIA
SGIATDGMKHTAQPVKDAGEKGGKEITDKVKSSIGK