Protein Info for DZA65_RS04595 in Dickeya dianthicola ME23

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1021 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 341 to 361 (21 residues), see Phobius details amino acids 366 to 389 (24 residues), see Phobius details amino acids 395 to 418 (24 residues), see Phobius details amino acids 439 to 460 (22 residues), see Phobius details amino acids 470 to 497 (28 residues), see Phobius details amino acids 529 to 547 (19 residues), see Phobius details amino acids 860 to 879 (20 residues), see Phobius details amino acids 886 to 904 (19 residues), see Phobius details amino acids 910 to 931 (22 residues), see Phobius details amino acids 961 to 981 (21 residues), see Phobius details amino acids 987 to 1011 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 13 to 1005 (993 residues), 549.2 bits, see alignment E=9.1e-169

Best Hits

KEGG orthology group: None (inferred from 96% identity to ddd:Dda3937_01474)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XTZ4 at UniProt or InterPro

Protein Sequence (1021 amino acids)

>DZA65_RS04595 efflux RND transporter permease subunit (Dickeya dianthicola ME23)
MSSGFKQQWNLSAWALAHQQLVAFFMLVIVAAGVMSYERLPRNEDPAFTIKTAVVSASWP
GATVQDTVSFVTDVLEKKLQETPYLDFIESYSRPGEAVIFVNLRDSTPPSEVQGIWYAIR
KKMKDIAPSLPDGVGEPAVNDEFDDTFGTIYGFTADGYSPRELRDRVDDIRTELLATPDV
GKIDVLGVQDEQIVAAFSPRQLAGMGLDLQQVTAALQAQNAVSPTGAIRTDNDKVALRVS
GAFVSEESLRQVTLHIGGRFIPLTDIATVYRQAAEPPAPAFRVNGQPAIGLAVSMAPTGN
MLDFGQALRSKMATIGASLPHGIEVINVADQSSVVKSSVNGFVKVLLEAVVIVLAVSFVS
LGSRAGLVVAASIPMVLTMTFTGMEIAGIGLQRISLGALIIALGLLVDDAMITVEAMVSS
LEKGEAREQAATRAYDTTAFPMLTGTLVMVAGFIPVGFAASSAGEYCYSLFIVVLISLLS
SWAVAVLFSPLIGVWLLPKAMNAHDHHAGRLSRAYDRLLSTALRYRGRTLLLSVALLALA
VVAAGRLEGEFFPASDRPELLVSLTLPRNASQQATEREVVRLEQSLKNDPDLDHFSTYVG
SGAVRFYLPMDVLLQNENIAQLVVVAKGLKERDALRARLEKRLQQDFSHLVTRVSPLELG
PPVGWPLKYRVTGPDIDKVREYAAGLATLIGGNPDAREVNLTAGEPERAIRIDLNQTEAR
AVGISSQDVASALATIFSGSVVTSVRDRNRMVGVVVRARDEERQNLDTVASLQLRAANGQ
RVPLGQIASVGYGVDEPIIWRRQRLPFITVQTDLAPGVRAQTLSTTLAPQVAAYQAALPA
GYHIEEGGSAAESNKGNNSVYQVLPVTLLVMLILLMVQLQRFSRMMLALLMAPFGLIGVV
AAMLPTGTPMGFVALLGVIALAGMIIRNAVILISEVDTNTAAGMTTNEAIIHAARHRSRP
ILLTALAAILGMIPIATQVFWGPMAYAIIGGLIVATLLTLTVLPAAVSLVMQWETRVKMQ
R