Protein Info for DZA65_RS04555 in Dickeya dianthicola ME23

Annotation: TIGR00645 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 53 to 77 (25 residues), see Phobius details amino acids 108 to 126 (19 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 1 to 167 (167 residues), 254.4 bits, see alignment E=3e-80 PF03350: UPF0114" amino acids 9 to 125 (117 residues), 130.7 bits, see alignment E=1.6e-42

Best Hits

Swiss-Prot: 89% identical to YQHA_ECOL6: UPF0114 protein YqhA (yqhA) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 96% identity to ddc:Dd586_0855)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XX98 at UniProt or InterPro

Protein Sequence (177 amino acids)

>DZA65_RS04555 TIGR00645 family protein (Dickeya dianthicola ME23)
MERFLENTMYAARWLLAPVYLGLSLGLLALAIKFFEEIWHVLPGIFSIAESDLILTLLSL
VDMTLVGGLLVMVMFSGYENFVSALDIDEHKEKLNWLGKMDASSLKNKVAASIVAISSIH
LLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDWLSRHEHHSHHAADKAHDKH