Protein Info for DZA65_RS04165 in Dickeya dianthicola ME23

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 transmembrane" amino acids 48 to 90 (43 residues), see Phobius details PF04865: Baseplate_J" amino acids 82 to 320 (239 residues), 112.4 bits, see alignment E=1.2e-36

Best Hits

KEGG orthology group: None (inferred from 94% identity to ddd:Dda3937_02559)

Predicted SEED Role

"Phage baseplate"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XTR8 at UniProt or InterPro

Protein Sequence (394 amino acids)

>DZA65_RS04165 hypothetical protein (Dickeya dianthicola ME23)
MTEKPKIDYEQVLKEAGMPVTAETVTEQFQAQVTASGLVTNTSRMSPFWRLISVMATTPV
IWLKDVLISVVLANMYLATASGPFLNLFAWGVNLSRKAATAAAGVVRFYKSDAAQAVVIP
AGTLIQTERINGTVFSVAVSVDTVIAAGLASADVPVTATADGGAFNLAPGYYRILPVGVA
GIERVENQEDWLLTPGADEESDDDLRERCRNQFNLVGNYHTDAVYRSMIAAVAGLSIDRI
FFQHDAPRGPGTANAYLLLDSGVVSQPFIDAVNDYITAQGHHGHGDDLRCMALPETQHEL
TVTVYVRNLVNVTDEALAALRSGCQDLVRCAFRENTGYDVAKTWPWSRFSFSTLAQELHD
AFPLIASLDFSLGDIVSGLNVPRLASLTVVIADA