Protein Info for DZA65_RS02855 in Dickeya dianthicola ME23

Annotation: FxsA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 19 to 19 (1 residues), see Phobius details amino acids 27 to 48 (22 residues), see Phobius details amino acids 77 to 101 (25 residues), see Phobius details PF04186: FxsA" amino acids 7 to 110 (104 residues), 111.4 bits, see alignment E=1.2e-36

Best Hits

Swiss-Prot: 69% identical to FXSA_ECOLI: UPF0716 protein FxsA (fxsA) from Escherichia coli (strain K12)

KEGG orthology group: K07113, UPF0716 protein FxsA (inferred from 87% identity to ddd:Dda3937_02719)

Predicted SEED Role

"FxsA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XWE7 at UniProt or InterPro

Protein Sequence (167 amino acids)

>DZA65_RS02855 FxsA family protein (Dickeya dianthicola ME23)
MRWLPLLLIFLFVYIEISIFIRVAEVLGVALTLLLVVLTSCIGISMVRNQGMKNIMLMQQ
RLQEGESPAAELVKSVSLILAGLLLVVPGFFTDFLGLLLLLPPVQKHLTLKLMPHLQIWR
GRPGPGTHGGQGNVFEGEFQRKDEHERLDKSDDDHRDGNPPNGSSPR