Protein Info for DZA65_RS02645 in Dickeya dianthicola ME23

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 103 to 125 (23 residues), see Phobius details amino acids 155 to 178 (24 residues), see Phobius details amino acids 215 to 235 (21 residues), see Phobius details amino acids 260 to 285 (26 residues), see Phobius details PF00528: BPD_transp_1" amino acids 100 to 282 (183 residues), 60.8 bits, see alignment E=7.7e-21

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 84% identity to pao:Pat9b_0371)

Predicted SEED Role

"FIG00895963: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CPZ2 at UniProt or InterPro

Protein Sequence (290 amino acids)

>DZA65_RS02645 sugar ABC transporter permease (Dickeya dianthicola ME23)
MLNHSTWRNMLYILPAAIVYALFLLLPLLTSVGISFTHWDGTSWPVFTGLSNFVRMFSDP
LFWISLRNNALLMLFYTLLPISVGLILCSFLHETRSDSERSLLRILFFLPYIMPMAVLGV
VWRWLYNPAFGPLDQLLRAIGLPQLAISWLGDFNWALPAVGLVATWYFFGFCLVLFMAGL
QRMEPSLLEAADLDGSSRRQKFLRITLPSLRPELRIALLLTVIASLKAFDLVYVMTQGGP
GTSTLVTNLYMYQQGFDLRYFGYASAVAIVSMLLVFLLNGLIHFAIRERY